Cytidine 5′-diphosphocholine, the inner-salt form defined in European law, supplied for identity confirmation, impurity work and method development. Laboratory reagent and analytical reference material only — not for human or animal consumption, and not a medicinal product, even though this molecule is the active substance of authorised medicines in other countries.
No catalogue purity figure is printed for this substance, because a purity number without a stated basis is not a specification: lot documentation gives the assay, the method, the basis and the water content. Full registry data, the salt and record identity traps, the phosphorus-spectrum gap, method development starting points, the legal specification in full and 47 cited sources are set out below.
Product classification — read before ordering. This item is a chemical reagent and analytical reference material. It is not a medicinal product, dietary supplement, food, feed, novel food or cosmetic, and it is not intended for human or animal consumption or for any in-vivo administration whatsoever. It is supplied exclusively to laboratories, research institutions and professional users for in-vitro analytical, chromatographic and method-development work. Scientific findings summarised on this page describe substances investigated in published laboratory and clinical research; they are reported here as bibliographic facts about that literature and are not product claims, dosage guidance, or a recommendation of any use of this reagent.
Two phosphorus atoms, and not one public phosphorus spectrum. Read sections 5, 7 and 9 before ordering. Citicoline carries a diphosphate bridge — 12.69% of its mass is phosphorus — and phosphorus-31 is the one nucleus that reports directly on whether that bridge is intact. The public compound record contains no 31P spectrum, no 1H spectrum, no 13C spectrum, no infrared, no Raman and no ultraviolet data [1]. It contains mass spectrometry and nothing else. At the same time the molecule has a computed logP of −4 and a polar surface area of 214 Å2 [1], so on a conventional reversed-phase column it elutes in the void volume together with its own hydrolysis products — the very impurities that European law limits by name and by number [5]. This page sets out what that means for anyone who has to prove which molecule is in the vial.
RZZPDXZPRHQOCG-OJAKKHQRSA-N. A second record shares the first block and ends -UHFFFAOYSA-N — section 3This page describes citicoline supplied as an analytical reference material: a weighed quantity of a single identified substance, intended as the point of comparison against which another sample is measured. It is the reagent a method is calibrated against, not an article for consumption.
Citicoline is a pyrimidine nucleotide. A cytosine base sits on a β-D-ribofuranose ring; the ring's 5′-position carries a diphosphate bridge; and the far end of that bridge carries a choline residue through its quaternary nitrogen. The molecule is therefore a zwitterion in its own right — a permanent positive charge on the quaternary ammonium, a negative charge on the phosphate — which is why the registry and European law both describe the marketed substance as an inner salt [1][5]. Biochemically it is the activated intermediate of the Kennedy pathway, the step at which choline is committed to phosphatidylcholine synthesis; that role was established in 1957 [28] and is set out in the modern review literature [38].
It is also, unusually for this catalogue, a compound with three simultaneous regulatory identities. It is an authorised medicine in several countries and carries the anatomical-therapeutic-chemical code N06BX06 [8]. It is an authorised novel food in the European Union, with a specification, quantitative limits and a mandatory labelling statement written into a Commission implementing regulation [5]. And it has no marketing authorisation in Poland at all [10]. A laboratory that meets this substance in a sample — a customs laboratory, a contract testing house, a university group — is therefore identifying a molecule whose legal status depends on which side of a border and which product category it is standing in.
Why a laboratory needs an authenticated standard of this particular compound. Four independent reasons, each measured rather than asserted, and each set out in full below. First, there is no deposited NMR spectrum of any nucleus, and none at all for phosphorus — the nucleus that reports on the diphosphate bridge (section 9). Second, the substance is sold commercially in two forms whose molar masses differ by 4.50%, so the form has to be declared before a mole count means anything, and this page declares one (section 3). Third, on the reversed-phase chromatography most laboratories reach for first, this analyte elutes at the void volume alongside the two impurities that European law limits by name (sections 5 and 7). Fourth, the published analytical literature for the substance in isolation is close to empty. every published method we found that determines it by chromatography or by optical spectroscopy determines it mixed with piracetam [19][21][22], and those three papers come from only two laboratories — two of them carry the same five authors in a different order. The one published bioequivalence study quantified the metabolite choline rather than the parent compound [23].
Two neighbouring cards in this catalogue turn on related problems and are worth reading against this one. Alpha-GPC is the other choline donor here, and it fails in a mirror-image way: it has a positional isomer that mass spectrometry cannot resolve, a published and validated quantitative 31P NMR method [26], and no deposited phosphorus spectrum to run it against. Citicoline has neither the method nor the spectrum. Procaine hydrochloride is the catalogue's clearest illustration of the other half of the problem — that a salt is a different substance with a different molar mass from the base it is made of, and that a weighing is only meaningful once you say which one you have.
The terms on which this and every other reference material here is supplied are collected in the reference standards category.
| INN | Citicoline; recorded in the registry as Citicoline [INN:JAN], JAN being the Japanese accepted name |
|---|---|
| Common names | CDP-choline; cytidine 5′-diphosphocholine; cytidine diphosphate choline; citicolina; citicolinum |
| CAS Registry Number | 987-78-0 |
| EC number | 213-580-7 |
| PubChem CID | 13804 |
| UNII (FDA) | 536BQ2JVC7 |
| ChEBI | CHEBI:16436 |
| ChEMBL | CHEMBL1231700 |
| DrugBank / DrugCentral | DB12153, cross-referenced also as DB04290 / 664 |
| KEGG | C00307 as a compound; D00057 as a drug, annotated to the Japanese pharmacopoeial listing |
| NCI Thesaurus | C96743 |
| DSSTox | DTXSID9048431 |
| MDL number | MFCD00868097 |
| NSC number | 122002 |
| Nikkaji | J55.713G |
| Wikidata | Q28529682 |
| ATC | N06BX06; veterinary QN06BX06 [8] |
| Trade names of medicines elsewhere | Somazina, Difosfocin, Recognan, Nicholin, Nicolin, Cidifos, Neucolis, Corenalin, Emicholin; Ceraxon is the sodium salt [1][2] |
| IUPAC (computed) | [[(2R,3S,4R,5R)-5-(4-amino-2-oxopyrimidin-1-yl)-3,4-dihydroxyoxolan-2-yl]methoxy-hydroxyphosphoryl] 2-(trimethylazaniumyl)ethyl phosphate |
|---|---|
| Name used in EU law | Choline cytidine 5′-pyrophosphate; cytidine 5′-(trihydrogen diphosphate) P′-[2-(trimethylammonio)ethyl] ester inner salt [5] |
| Connectivity SMILES | C[N+](C)(C)CCOP(=O)([O-])OP(=O)(O)OCC1C(C(C(O1)N2C=CC(=NC2=O)N)O)O |
| Isomeric SMILES | C[N+](C)(C)CCOP(=O)([O-])OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=NC2=O)N)O)O |
| InChI | InChI=1S/C14H26N4O11P2/c1-18(2,3)6-7-26-30(22,23)29-31(24,25)27-8-9-11(19)12(20)13(28-9)17-5-4-10(15)16-14(17)21/h4-5,9,11-13,19-20H,6-8H2,1-3H3,(H3-,15,16,21,22,23,24,25)/t9-,11-,12-,13-/m1/s1 |
| InChIKey | RZZPDXZPRHQOCG-OJAKKHQRSA-N |
| Computed descriptors | XLogP3 −4 · TPSA 214 Å2 · donors 4 · acceptors 11 · rotatable bonds 10 · heavy atoms 31 · complexity 821 · formal charge 0 · covalently bonded units 1 · isotope atoms 0 · canonicalised |
Three rows in that second table decide something practical later, and are worth pausing on. The formal charge is zero while the molecule carries two full charges — a permanently cationic quaternary nitrogen and an anionic phosphate. That is what inner salt means, and it is why the pH of a mobile phase is a far weaker lever here than a chemist's instinct suggests (section 6). XLogP3 −4 is an extreme value even among polar compounds; the lipophilic end of this catalogue, bromantane, sits at the opposite extreme, and no single reversed-phase method covers both. Ten rotatable bonds makes this a conformationally floppy molecule, which matters both for the ion-mobility data in section 8 and for any attempt to predict retention from structure.
Before any chemistry, the bookkeeping — because for this substance the identity question is not what but which. Three distinct problems attach to the name citicoline, and each of them can put the wrong number on a certificate.
Citicoline is traded in two forms that are chemically different substances with different registry entries, different CAS numbers and different masses.
| Property | Inner salt (free acid, zwitterion) | Sodium salt |
|---|---|---|
| CAS | 987-78-0 | 33818-15-4 |
| PubChem CID | 13804 | 36605 |
| EC number | 213-580-7 | 251-689-1 |
| UNII | 536BQ2JVC7 | 7XQ5AKD9YD |
| DSSTox / MDL | DTXSID9048431 / MFCD00868097 | DTXSID4048981 / MFCD10567436 |
| Formula | C14H26N4O11P2 | C14H25N4NaO11P2 |
| Molecular mass | 488.32 | 510.31 — heavier by 21.99 g·mol−1 |
| Monoisotopic mass | 488.10733165 | 510.08927590 |
| InChIKey | RZZPDXZPRHQOCG-OJAKKHQRSA-N | YWAFNFGRBBBSPD-OCMLZEEQSA-M |
| Covalently bonded units | 1 | 2 — the record is a two-component salt |
| Named in the EU novel food specification | Yes, explicitly as the inner salt [5] | No |
| Typical trade names | Somazina, Difosfocin, Recognan | Ceraxon; recorded status Citicoline sodium [USAN] |
The InChIKeys differ in the first block, which is the skeleton hash. That is the strongest possible statement of non-identity: these are not two spellings of one substance, they are two substances. The practical consequence is arithmetic. A fixed weighing of 1000 mg delivers 2.048 mmol if it is the inner salt and 1.960 mmol if it is the sodium salt — 4.3% fewer moles from the same reading on the same balance. A calibration curve built on the wrong assumption is biased by that amount before the first injection, and no amount of chromatographic care recovers it.
The same trap in a more familiar form is the reason procaine hydrochloride is described on its own page by salt and not by base: the counter-ion is part of the formula weight, and the formula weight is the only thing that converts a mass into a mole count.
A formula-and-mass search for this compound can land on a record that says it has four undefined stereocentres. Registry entry CID 13013858, filed under the name Cytidine-5′-Diphosphocholine, carries the identical molecular formula C14H26N4O11P2, the identical molecular mass 488.32, and the identical monoisotopic mass 488.10733165 [3]. Its InChIKey is RZZPDXZPRHQOCG-UHFFFAOYSA-N — the same first block as the authentic record, differing only in the stereochemical layer, and its stereodescriptor counts read defined 0, undefined 4. It is a flat representation of the same connectivity: the same molecule drawn without its stereochemistry.
This matters because of how identity checks are usually automated. A script that matches on formula and accurate mass — the two fields any mass spectrometer hands you — cannot distinguish the two records at all, and if it lands on the flat one it will report a substance with four unresolved stereocentres. That is a materially different statement from what the authentic record says, and it is exactly the statement that would send a purchaser looking for a chiral separation that this compound does not need (section 4).
The picture is completed by four further records that resolve from the same names or the same formula [1][2][4]:
| Record | What it is | How to tell it apart |
|---|---|---|
| CID 13804 | The authentic inner salt, full stereochemical layer | InChIKey ends -OJAKKHQRSA-N; four defined stereocentres |
| CID 13013858 | Same connectivity, no stereochemistry | InChIKey ends -UHFFFAOYSA-N; four undefined stereocentres; same formula and same exact mass |
| CID 13805 | The protonated cation, C14H27N4O11P2+, mass 489.33 | InChIKey ends -OJAKKHQRSA-O — the final letter, not the middle block, is what changed |
| CID 36605 | The sodium salt | Different skeleton hash entirely; two covalent units |
| Two duplicate entries | One repeats the InChIKey of the inner salt but counts two covalent units; one repeats the InChIKey of the sodium salt | Ordinary registry housekeeping, but a downstream system reconciling one against the other will report a mismatch that is not real |
A name search for citicoline returns dozens of identifiers. The number that is unambiguous is not the name and not the mass — it is the full InChIKey, and for the material described here it is RZZPDXZPRHQOCG-OJAKKHQRSA-N.
The authentic record keeps a list of removed synonyms — strings that were once attached to it and have since been withdrawn. Among the 51 entries on that list there is exactly one string in CAS format: 125602-26-8. Looking that number up does not fail. It resolves cleanly, to a completely unrelated substance: a protected arginine derivative with the formula C22H36N4O7S and a molecular mass of 500.6 [1].
This is a contamination of the record, not a superseded CAS number for citicoline; the substance has no deprecated registry numbers that we could find. The danger is specific and mechanical: a script that harvests CAS-shaped strings from a synonym list, rather than reading the single authoritative field, will pick up a number for a different compound whose mass is close enough (500.6 against 488.32) not to look absurd. The correct and only CAS number for the substance described here is 987-78-0, confirmed independently by the registry [1] and by the text of the European regulation [5].
Descriptions of a “CDP-choline citrate” circulate in commercial listings. No citrate salt of citicoline exists in any registry we can reach, and it is not the substance European law describes. The regulation is explicit about composition: “Citicoline is composed of cytosine, ribose, pyrophosphate and choline” [5]. There is no citrate anywhere in that molecule, in any commercial form of it, or in the authorised specification. The two forms that exist are the ones tabulated in section 3.1. Similarly, figures around 18.5% choline circulate in listings for this material; they are not registry values. The arithmetic on registry masses gives 21.33% for the inner salt (104.17 divided by 488.32) and 20.41% for the sodium salt (104.17 divided by 510.31). A figure near 18.5% is only reached by assuming a hydrated sodium salt — that is, by assuming a third form again, and one that is not what a CAS number of 987-78-0 describes.
The registry states the stereochemistry of this compound without ambiguity. Quoted verbatim from the record [1]:
| Defined atom stereocentre count | 4 |
|---|---|
| Undefined atom stereocentre count | 0 |
| Defined bond stereocentre count | 0 |
| Undefined bond stereocentre count | 0 |
| Covalently bonded units | 1 |
| Isotope atom count | 0 |
Four defined, zero undefined. This is a single, fully specified stereoisomer, not a mixture and not a partially resolved structure. The configuration is carried in the systematic name as (2R,3S,4R,5R) and in the isomeric SMILES string as four explicit stereo-marked centres; the InChIKey's second block, OJAKKHQRSA, is the hash of that stereochemical layer, which is why it differs from the flat record discussed in section 3.2.
All four centres sit on one small part of the molecule: the β-D-ribofuranose ring of the cytidine half. C-1′ carries the glycosidic bond to the cytosine nitrogen and fixes the anomeric configuration; C-2′ and C-3′ carry the two secondary hydroxyls; C-4′ carries the exocyclic carbon that leads to the phosphate. The choline half of the molecule contributes nothing: it is a straight chain of two carbons between a quaternary nitrogen and an oxygen, with no stereocentre in it at all.
Neither phosphorus atom is a stereocentre, and this is worth stating explicitly because the intuition runs the other way. A tetravalent phosphorus with four different substituents is stereogenic, and phosphorus stereochemistry is a real and consequential field in nucleotide chemistry. It does not apply here. In citicoline each phosphorus carries two equivalent oxygens: a formally doubly bonded oxygen and a hydroxyl or oxide oxygen that are interchanged by tautomerism and resonance, so the two positions are not distinguishable substituents. The same picture holds at both phosphorus atoms. Two identical substituents means the atom is not a stereocentre in the first place, which is precisely why the registry counts four and not six. A supplier document or certificate claiming a “chiral phosphorus centre” for this substance would be claiming something the descriptor set contradicts.
Because the compound is a single defined stereoisomer with no undefined centres, chiral chromatography is not the identity problem here. That is a genuine difference from other cards in this catalogue. Tadalafil carries two defined centres and shares its exact mass with a family of stereoisomers that mass spectrometry cannot separate, so for that compound the chiral question is the identity question. For citicoline the stereochemistry is inherited intact from the ribose of the biological or synthetic starting material, and no realistic manufacturing route produces the wrong diastereomer as a bulk component.
What the stereochemistry does mean is this: the ribose configuration is the part of the molecule that degradation attacks, not the part that manufacturing gets wrong. Cleavage of the glycosidic bond releases free cytosine; hydrolysis of the diphosphate bridge releases 5′-cytidylic acid and phosphate. Both processes destroy the intact molecule while leaving fragments that are chemically similar to it and chromatographically very close to it. The stereochemistry is stable; the connectivity around it is not. That is the subject of the next three sections.
Read the computed descriptors again as a set, because together they close off nearly every standard analytical lever at once [1]:
| Descriptor | Value | Analytical consequence |
|---|---|---|
| XLogP3 | −4 | Far more polar than any reversed-phase stationary phase is designed to retain. The analyte partitions into the mobile phase and leaves with it |
| Topological polar surface area | 214 Å2 | An extremely polar surface. Combined with the logP value this is the numerical statement of “this will elute in the void” |
| Hydrogen-bond donors / acceptors | 4 / 11 | Strong solvation in water; a hydrophilic stationary phase has plenty to interact with, a C18 chain has almost nothing |
| Formal charge | 0, but as a zwitterion | The quaternary ammonium is positively charged at every pH. It cannot be neutralised by buffer, so mobile-phase pH does not switch the charge state off |
| Rotatable bonds | 10 | Conformationally flexible; retention and ion-mobility behaviour are averaged over many conformers |
| Heavy atoms / complexity | 31 / 821 | A large, information-rich molecule — which is why its fragmentation is informative even though its retention is not |
The permanent cationic charge is the part that surprises people. With an ordinary amine, raising the pH converts the ammonium to a free base and retention returns. A quaternary ammonium has no proton to lose: it stays charged in acid, in base, and everywhere between. L-DOPA is the useful contrast in this catalogue — also a very polar, poorly retained zwitterion, but one whose charge state does respond to pH and whose primary amine offers a handle for derivatisation. Citicoline offers neither.
And here is why poor retention is not merely inconvenient but diagnostically fatal. The compound's own degradation products are also very polar nucleotides: 5′-cytidylic acid from hydrolysis of the diphosphate bridge, cytidine from further loss of phosphate, free phosphate itself. On a reversed-phase column they elute in the void volume too — in the same unretained band as the parent compound. A chromatogram that shows one peak is therefore not evidence of one substance; it is evidence that nothing separated. Both of the impurities that European law limits for this substance by name and by number [5] live inside that peak.
The literature confirms this is a real difficulty rather than a local one, and it does so in an unusually sharp way. The single published bioequivalence study of citicoline — a regulatory-grade study, done properly, published in a peer-reviewed analytical journal — quantified choline, the metabolite, and not citicoline itself [23]. Its title says so explicitly. When a registration-grade study measures the breakdown product rather than the parent, the parent is not easy to measure.
| Standard technique | Why it fails for this analyte |
|---|---|
| C18 reversed-phase retention | XLogP3 −4, TPSA 214 Å2. The analyte elutes at or near the void volume, together with its own hydrolysis products |
| pH manipulation of retention | The quaternary ammonium is charged at all pH values. There is no neutral form to generate |
| Ultraviolet detection as an identity test | The cytosine ring does absorb in the ultraviolet, which is why nucleotide work uses UV routinely [27]. But no ultraviolet spectrum and no absorption maximum are deposited for this compound [1], so the response factor is not publicly anchored — and the degradation products carry the same chromophore, so UV cannot tell them apart |
| Gas chromatography | A permanently charged, non-volatile zwitterion. There is no deposited GC-MS spectrum, and there should not be |
| Derivatisation to add retention | The obvious handles are not available: no primary or secondary amine, and hydroxyl derivatisation on the ribose competes with the phosphate chemistry |
| Library matching on accurate mass | Matches the flat record and the authentic record equally well (section 3.2), and cannot distinguish either from a co-eluting isobaric species |
These are starting points for method development anchored in published work, not validated procedures, and they are offered as such:
Compare how differently this plays out for compounds whose detection is trivial. Methylene blue is intensely coloured and can be quantified by absorbance almost carelessly; mebicar sits at the opposite pole, with no useful chromophore at all. Citicoline occupies an awkward middle: it has a chromophore, it is simply shared with every one of its degradation products, so the detector that sees it cannot tell you what it is seeing.
Most substances in a catalogue like this have no legally binding specification at all. Citicoline is an exception, and the exception is useful, because Commission Implementing Regulation (EU) 2017/2470 — the Union list of novel foods — contains a full monograph-style specification for it. These are not marketing figures; they are the numbers that appear in the Official Journal [5].
| Parameter | Value in the regulation |
|---|---|
| Description | “Citicoline is composed of cytosine, ribose, pyrophosphate and choline. White crystalline powder” |
| Chemical formula | C14H26N4O11P2 |
| Molecular weight | 488.32 g/mol |
| CAS number | 987-78-0 |
| pH, 1% solution | 2.5–3.5 |
| Assay | ≥98% of dry matter |
| Loss on drying, 100 °C for 4 hours | ≤5.0% |
| 5′-Cytidylic acid | ≤1.0% |
| Free phosphoric acids | ≤0.1% |
| Ammonium | ≤0.05% |
| Arsenic | Not more than 2 ppm |
| Total plate count | ≤103 CFU/g |
| Yeasts and moulds | ≤102 CFU/g |
| Escherichia coli | Absence in 1 g |
| Permitted sources | Synthetic; and microbial, “produced by fermentation using a genetically modified strain of E. coli (BCT19/p40k)”, with an identical specification |
Now put that table next to the only spectrum the public record contains. The deposited liquid-chromatography mass spectrum of the deprotonated molecule, [M−H]− at m/z 487.09953, has these five most intense fragments [13]: 428.0274 (base peak), 78.9601, 304.0353, 110.0364 and 122.9852. Read them against the impurity limits above, and read the accurate masses carefully, because one of them is easy to get wrong. The base peak at 428.0274 is a loss of 59.07 mass units from the precursor: the neutral loss of trimethylamine from the choline end. The fragment at 304.0353 is the cytidine monophosphate portion of the molecule, released by cleavage of the diphosphate bridge — but in its cyclised, dehydrated form: the accurate mass matches C9H11N3O7P−, calculated 304.034. Deprotonated 5′-cytidylic acid itself is m/z 322.045, eighteen mass units higher, and a certificate that labels 304 as cytidylic acid has mis-assigned it by a water molecule. The fragment at 78.9601 is the metaphosphate anion PO3− (calculated 78.959), the direct marker of phosphate release. The fragment at 122.9852 is not a free-phosphate species: it matches C2H4O4P− at 122.985 to within a tenth of a millimass unit — the phosphorylated two-carbon remnant of the choline arm after the trimethylamine has gone. Dihydrogen phosphate would be 96.970. The fragment at 110.0364 is deprotonated cytosine (calculated 110.036), from cleavage of the glycosidic bond.
Read that way, the spectrum still says something the specification says: the two bonds that break first in the collision cell are the two bonds whose hydrolysis produces the impurities the regulation names — the P–O–P bridge, which yields the cytidine monophosphate species and free phosphate, and the glycosidic bond, which yields cytosine. The diphosphate bridge and the glycosidic bond are the weakest points of this molecule in a mass spectrometer and in a sample vial alike. What the spectrum does not do is hand you the regulated impurities at their nominal masses; the fragment ions are dehydrated and rearranged relative to the intact impurity molecules, and treating a fragment mass as an impurity mass is a mis-identification waiting to happen.
Two honest caveats belong with that paragraph. First, the fragment assignments above are our reading of the deposited masses — each one checked against a calculated elemental composition, consistent with the known chemistry of nucleotide diphosphates, but not a quotation from a published fragmentation study; no such study for this compound was found. Second — and more important for anyone treating this as a specification — the regulation quoted here is food law, not pharmacopoeial law. It is the authorised specification for citicoline as a novel food ingredient in the European Union. Whether a monograph for this substance exists in the European or United States Pharmacopoeia we did not establish and do not assert; those are different texts under a different regime, and the two must not be conflated.
This section attributes every number to the source that carries it, because for this compound the sources cover different ground and one of them is a legal text rather than a measurement. Where values disagree, the disagreement is shown rather than resolved.
The experimental properties section of the registry record holds one class of measurement and nothing else: collision cross section, from drift-tube ion mobility [1]. There is no melting point, no boiling point, no solubility figure in any solvent, no acid dissociation constant, no density, no refractive index, no specific rotation, and no physical description. That is a finding about the record, established by reading the whole of it, not a gap in a search.
| Ion | Value (Å2) | Method as recorded |
|---|---|---|
| [M+H]+ | 197.6 | Drift tube, single field, calibrated with a commercial tune mix |
| [M+H]+ | 198.86 | Drift tube, stepped field |
| [M+H]+ | 198.3 | Drift tube, single field, low-concentration tuning mix |
| [M−H]− | 200.64 | Drift tube, single field, commercial tune mix |
| [M−H]− | 208.41 | Drift tube, stepped field |
| [M−H]− | 205.9 | Drift tube, single field, low-concentration tuning mix |
| [M+Na]+ | 208.98 and 207.8 | Stepped field; single field, low-concentration mix |
| [M+Na−2H]− | 210.2 | Drift tube, single field, low-concentration mix |
Note the spread in the negative-ion values: 200.64, 205.9 and 208.41 Å2 for the same ion of the same molecule, a range of nearly 4%. That is not a contradiction to be resolved by picking one; it is what happens when a flexible molecule with ten rotatable bonds is measured against three different calibrations. Anyone using a collision cross section as an identity criterion should match the calibration as well as the number.
The only official statements about the appearance and behaviour of this material as a solid come not from a chemistry database but from the Union list [5]: white crystalline powder, and pH 2.5–3.5 for a 1% solution. The second figure is more informative than it looks. A one per cent aqueous solution of this substance is distinctly acidic, which follows from the free hydroxyl on the bridging phosphate, and which matters directly for solution stability — a diphosphate bridge is not at its most stable in acid.
That the substance is genuinely crystalline is corroborated independently by the oldest literature on it: crystallisation from yeast was reported in 1956 [15], and the molecular structure was solved by X-ray diffraction in 1975 [14]. The 1975 paper remains the only crystallographic determination of this molecule we could identify, and it is therefore the single hard anchor for any statement about conformation or solid-state geometry.
One paper in the biomedical index is devoted explicitly to the physicochemical characteristics of this substance. It was published in 1983, it is indexed under PMID 6684450, and it has no digital object identifier and no cross-publisher record at all [16]. It is, in the fullest sense, outside the digital circulation of chemical data: the values it contains cannot be resolved, cited by link, or harvested automatically. Note also a small bibliographic detail that a careless citation will get wrong — the issue is 7A, not 7.
Read that alongside the empty experimental section of the registry record and the position becomes clear. This is not a substance nobody has measured. It is a substance whose measurements were made four decades ago, in a journal issue that never acquired a persistent identifier, and were never abstracted into the databases where a modern laboratory looks. A melting point determined on your own material today would be a datum that is not currently public.
No solubility value for this compound exists in the registry in any solvent [1]. What can be said without inventing anything: a zwitterionic nucleotide with a computed logP of −4 and a polar surface area of 214 Å2 is a water-soluble compound and a poorly soluble one in non-polar organic solvents, and the regulation's own use of a 1% aqueous solution as the pH test condition [5] establishes that at least that concentration dissolves. Beyond that we give no figure, because there is none to give. Determine it on your own material, and record the temperature when you do.
The contrast with the better-characterised end of this catalogue is instructive. For a compound such as paracetamol, decades of pharmacopoeial work mean that melting range, solubility and spectra are all tabulated and mutually consistent. For citicoline — a compound with a longer clinical history than most of the catalogue — the corresponding table is empty. Clinical volume and analytical characterisation are independent quantities, and this substance is the clearest example of the gap between them.
| Technique | Present | Detail and limitation |
|---|---|---|
| MS/MS, positive ion | Yes | Reference library entry 1053658; precursor [M+H]+ m/z 489.1146; ion trap, MS2; 13 peaks; three most intense at 378.2, 360.2, 264.2 |
| MS/MS, negative ion | Yes | Library entry 1170509; precursor [M−H]− 487.1001; 28 peaks; three most intense at 336, 428, 416 |
| MS/MS, doubly charged | Yes | Library entry 1170468; precursor [M+2H]2+ 245.0609; 97 peaks; three most intense at 112, 360, 378 |
| LC-MS | Yes | Two deposits, PT207070 and PT201910; [M−H]− 487.09953; quadrupole time-of-flight, negative electrospray, collision ramp 5–45 V; structural hash splash10-004i-6505900000-fc13e5ad403e7faf8218 [13] |
| 1H NMR | No | — |
| 13C NMR | No | — |
| 31P NMR | No | For a molecule that is 12.69% phosphorus by mass. See below |
| Infrared | No | No condensed-phase and no vapour-phase spectrum of any kind |
| Raman | No | The word appears in the record only inside a generic description of what spectral sections may contain — not as data |
| Ultraviolet-visible | No | Despite the cytosine chromophore being the basis of routine nucleotide detection [27] |
| GC-MS | No | Expected: a non-volatile, permanently charged zwitterion |
| Powder diffraction, solid-state NMR | No | No polymorph information of any kind; the 1975 single-crystal structure [14] is the only solid-state datum |
Phosphorus-31 is close to an ideal nucleus for this problem. It is spin one-half, it is 100% naturally abundant, and its chemical shift range is wide enough that a diphosphate bridge, a phosphate monoester and free inorganic phosphate occupy clearly separated regions of the spectrum. One quantitative 31P measurement therefore answers the question that this molecule's specification is built around — is the P–O–P bridge intact, and how much monophosphate and free phosphate is present — without a chromatographic separation, without a chromophore, and without needing a response factor for an ultraviolet detector.
There is no such reference spectrum in the public record for this compound. And this is not an artefact of where we looked: a search of the biomedical index for this substance together with phosphorus NMR returns four papers, and all four are in-vivo or in-cellulo studies — the detection of CDP-choline inside cultured tumour cells, where the shift positions were shown to depend on pH [24], and the accumulation of the compound in erythrocytes in a haemolytic disorder [25]. Not one of them is a characterisation of reference material. The nucleus has been used to find this molecule in tissue; it has never been used, publicly, to certify a sample of it.
The practical consequence. A laboratory that wants to verify the integrity of the diphosphate bridge by 31P NMR has the instrument, has the nucleus, and has a published precedent for the technique on a closely related choline phosphate [26] — but has no reference spectrum of citicoline to compare against, and no published shift assignments for the intact molecule as a solid or as a standard solution. The shift positions are known to move with pH [24], and the substance's own 1% solution sits at pH 2.5–3.5 [5], so the reference cannot be borrowed casually from a physiological-pH study either. Someone has to record the spectrum of an authenticated sample, once, at a stated pH — and that sample has to be an authenticated sample. That is the argument for holding characterised material rather than relying on a database match.
The deposited mass spectra are genuinely useful and should be used. The negative-ion fragment set gives a direct readout of the two regulated impurity classes (section 7), and the doubly protonated precursor produces a rich 97-peak spectrum that is far more distinctive than any single transition. What mass spectrometry cannot do here is distinguish the authentic stereochemically defined substance from the flat record's connectivity (section 3.2), because they are the same set of atoms in the same arrangement; nor can it settle whether the material in hand is the inner salt or the sodium salt once the sodium is stripped or added in the source. Those are questions for the certificate and the elemental composition, not for the mass spectrometer.
The literature on citicoline is substantial. It is also distributed extremely unevenly, and the distribution — not the total — is what a laboratory buying a standard needs to know. The measurements below were taken with positive controls, so that a low count can be distinguished from a failed query.
| Query | Records | Reading |
|---|---|---|
| Cross-publisher index, citicoline | 658 | Compare: piracetam 863, modafinil 1,849, paracetamol 14,703, caffeine 23,272. A modest total for fifty years of pharmaceutical use |
| Biomedical index, paracetamol and HPLC | 1,359 | Positive control — the query works |
| Biomedical index, citicoline and HPLC | 30 | Thirty papers, most of them clinical rather than methodological |
| Biomedical index, nucleotides with ion-pair chromatography | 326 | Positive control — the methodology exists for the compound class |
| Biomedical index, citicoline with ion-pair or hydrophilic-interaction chromatography | 2 | Against a control of 326 for the class, this is a real methodological gap, not a query failure |
| Biomedical index, citicoline with phosphorus NMR | 4 | All four in vivo or in cells; none about reference material (section 9) |
| Biomedical index, citicoline with crystal, X-ray, polymorph or solid form | 18 | Few, and dominated by the historical structural work [14][15] |
| Biomedical index, citicoline with fermentation or enzymatic synthesis | 20 | A live production literature — section 10.2 |
The pattern in the analytical literature is unusual enough to be worth stating directly. Three published quantitative methods determine citicoline by chromatography or by optical spectroscopy, and all three determine it in the same combination — with piracetam: a stability-indicating chromatographic method for the pair [19], a spectrofluorimetric method for citicoline in the presence of co-formulated piracetam [21], and a spectrophotometric method for the pair in tablet form [22]. Two of those three are the same laboratory. References [19] and [21] carry an identical set of five authors — Abdelrahman, Ahmed, Omar, Derayea and Abdelwahab — listed in a different order; only [22] is an independent group. A citation count of three therefore overstates the independent methodological base, which is two. There is in addition a potentiometric method using an ion-selective electrode, which stands alone [20], and a modern chromatographic separation of the phosphocholine / CDP-choline pair developed for enzyme assay work [18].
What is absent from that list is a validated, standalone, stability-indicating chromatographic method for citicoline as a single substance. The closest published work is a method for a mixture; the most rigorous published bioanalytical work measured the metabolite instead [23]. This is why section 6 offers starting points rather than procedures.
European law authorises citicoline from two sources with an identical specification: chemical synthesis, and fermentation with a genetically modified E. coli strain [5]. Both routes have a literature, and the distinction matters to a purchaser because trace impurity profiles differ even where the main specification does not.
The biosynthetic definition of the molecule dates to 1957 [28]. The industrial fermentation route traces to enzymatic production of pyrimidine nucleotides using Corynebacterium ammoniagenes and recombinant E. coli cells, published in 1997 [29] — the earliest published precedent we found for a route of the kind the regulation names, although the regulation identifies its authorised strain (BCT19/p40k) and no source we consulted links that strain to this paper. Modern work on that route covers multi-enzyme systems driven by an ATP donor module [32], enzyme engineering for high-salt conditions [33], production in living cells through engineered substrate and energy metabolism [34], and the design of one-pot industrial systems [35]. On the chemical side, efficient synthesis of the compound and its analogues was published in 2015 [30] and an improved selective-phosphorylation route in 2016 [31]; a 2024 review surveys the field as a whole [36]. There is even a demonstration that the diphosphate bridge can form without any enzyme at all [37] — which is a reminder that a bond formed that easily is not an especially strong one.
Everything in this subsection is a bibliographic fact about published work. None of it is a statement about the material sold on this page, and none of it constitutes a claim of any property or effect of this reagent.
The compound's biochemical role in the Kennedy pathway is set out in a standard review [38]. Pharmacological reviews of the compound in central-nervous-system contexts exist from 2005 [39] and, in the most extensive single treatment, an eighty-nine-page update published in 2022 [45]. A critical review published in 2014 is titled, tellingly, Facts, Doubts and Unresolved Issues [41], and a 2019 review by Polish authors asks in its title whether this is a superior form of choline — that is, poses the comparison as a question [42]. A large international multicentre randomised trial in acute ischaemic stroke was published in 2012 [43], and the Cochrane systematic review of that indication appeared in 2020 [44]. A randomised trial concerning memory function in healthy older adults was published in 2021 [46], and the compound remains under investigation in newer trials, including a protocol published in 2024 for a study in lung injury [47].
Two bibliographic cautions that a citation manager will not raise for you.
First, a retraction. A widely cited mechanistic paper on CDP-choline and phospholipase activity, published in a major biochemistry journal in 2006, was retracted in 2013 [40]. It remains highly cited, it is indexed, and a search for mechanistic work on this compound returns it readily. Anyone assembling a bibliography for this substance should check that entry specifically.
Second, two disagreements between indexes over authorship. For the 1956 crystallisation paper [15], the biomedical index and the cross-publisher registry list different first authors; the same happens for the 2013 spectrophotometric paper [22]. We cite both according to the cross-publisher record and flag the divergence rather than silently choosing. A third divergence concerns a year: one production paper carries 2016 as its registration year and 2017 as its issue year [32]; we cite the issue year.
Every statement in this section was measured against a named document, and every negative was measured with a positive control that fired on the same document. A search returning zero proves nothing unless the instrument is shown to be pointing at the right text.
| European Union — food law | Authorised novel food, listed in the Union list with a full specification [5]. Quantitative limits apply: food supplements are capped at 500 mg per day, and foods for special medical purposes at 250 mg per portion with a maximum of 1000 mg per day. The regulation also requires that the labelling of foods containing citicoline “shall bear a statement that the product is not intended to be consumed by children”. None of this applies to the article sold here, which is not a food and is not supplied for consumption — it is quoted because it is the authoritative published specification for the substance |
|---|---|
| European Union — scientific basis | Authorisation rests on a safety opinion issued in 2013 [6]. A separate 2024 opinion assessed a health claim about memory function and concluded, verbatim, that “a cause-and-effect relationship has not been established” [7]. We report that as what it is: the outcome of a scientific assessment of somebody else's claim, and a reason no such claim appears anywhere on this page |
| Poland — medicinal product | None. Thirteen queries against the national register — the international name, its Polish and Spanish forms, a deliberate three-letter stem, and nine trade names used elsewhere — returned zero [10]. Controls: a common analgesic returns 43 records, and a partial-word query returns a live veterinary product, proving that substring matching works and that the zeros are not an artefact of exact matching |
| Poland — controlled substances | Not scheduled in any narcotic, psychotropic or new-psychoactive-substance schedule [11]. Controls on the same document: the amphetamine stem returns 27 occurrences and cocaine 2, both matching expected values |
| United States | Not an approved drug. A national drug code search returns a single record, and that record is an unapproved homeopathic product rather than a citicoline medicine. The substance circulates there under dietary-supplement legislation. Not scheduled as a controlled substance: the substance name, and the stems choline, cytidine and CDP, return zero occurrences in the alphabetical schedule of controlled substances [12], on a text in which the controls amphetamine (25 occurrences), ketamine (2), cocaine (2) and modafinil (1) all fired |
| Where it is a medicine | The substance holds the international nonproprietary name citicoline and the code N06BX06, with a veterinary counterpart QN06BX06 [8]. It is recorded as a Japanese accepted name and annotated in a metabolic-pathway database to the Japanese pharmacopoeial listing; it is marketed as a medicine in several countries under the trade names listed in section 2. We report this from registry annotations and the literature, not from national registers we could query directly |
| Anti-doping, 2026 | Not listed by name on the 2026 prohibited list [9]. Controls fired on bromantan (2 occurrences) and modafinil (4) in the same document, so the instrument was working. The stimulant class was inspected specifically; the substance appears in neither its specified nor its non-specified subsection |
| Hepatotoxicity annotation | The registry carries a liver-injury dataset annotation classifying citicoline as negative [1]. This is a database annotation about a substance, not a safety statement about this reagent |
A trap in the regulatory metadata itself. The compound record's own regulatory field cites Regulation (EC) No 258/1997 as the legal basis for the novel food assessment. That regulation has been repealed and replaced by Regulation (EU) 2015/2283, under which the current Union list [5] was made. A system harvesting the legal basis mechanically from that field will import a repealed instrument into a compliance document. The operative texts for this substance today are the 2015 framework regulation and the 2017 implementing regulation that carries the specification.
| Signal word | Warning |
|---|---|
| Hazard statements | H315 (100%) — causes skin irritation; H319 (100%) — causes serious eye irritation; H335 (100%) — may cause respiratory irritation |
| Hazard classes | Skin corrosion/irritation category 2; serious eye damage/eye irritation category 2; specific target organ toxicity, single exposure, category 3, respiratory tract irritation |
| Precautionary statements | P261, P264, P264+P265, P271, P280, P302+P352, P304+P340, P305+P351+P338, P319, P321, P332+P317, P337+P317, P362+P364, P403+P233, P405, P501 |
| Basis | Two reports by companies, from two notifications — quoted from the summary line of the inventory record |
| Harmonised classification | None. No entry in the harmonised classification annex |
| Pictogram field | Empty in the record. We do not fill it in from inference |
The three hundred-per-cent figures need reading carefully, because a reader who sees H315, 100% will reasonably infer an industry consensus. What it means here is two out of two. Two companies filed, and the two agreed. That is the second-weakest basis the inventory permits, and it is a very long way from the aggregated classification of a widely notified industrial chemical.
Two further qualifications belong beside it. First, the classification is not harmonised, so it is not legally binding anywhere in the European Union, and another supplier may lawfully classify the same substance differently. Second, no acute toxicity values are present in the record itself — the corresponding sections are pointers to external tables that carry no values in the record as we read it. The classification therefore rests on self-notification, and the underlying study data is not visible from the record.
What follows from that for practical work is not complacency but the opposite: treat the three irritation statements as the minimum reasonable assumption, not as a complete hazard profile, and record in your own risk assessment that the classification derives from two notifications and is unharmonised.
| Personal protection | Nitrile gloves, safety glasses, laboratory coat. Weigh in a fume hood or under local exhaust. The recorded classification is skin, eye and respiratory irritation, so the controlling risks are airborne fines during weighing and hand-to-eye transfer |
|---|---|
| Risk assessment | Record explicitly that the classification comes from two notifications and is not harmonised (section 12), and that no acute toxicity value is visible in the compound record |
| Temperature | Cool, closed container. No stability study for this material exists in the public record, so we will not quote a storage temperature as though one had been validated |
| Moisture | Keep dry, and treat water as a quantitative problem rather than a housekeeping one. European law permits up to 5.0% loss on drying for compliant material [5], which is a legal tolerance for non-stoichiometric water, not a defined hydrate. No hygroscopicity study for this compound exists in any registry we can reach, so we state the tolerance and not a rate of uptake |
| Solution stability | The diphosphate bridge is the weak point, and its hydrolysis produces 5′-cytidylic acid — the impurity capped at 1.0% in the specification [5], and the origin of the cytidine-monophosphate fragment at m/z 304.04 in the deposited spectrum (section 7). Prepare solutions fresh, keep them cold, and be aware that a 1% aqueous solution is itself acidic at pH 2.5–3.5 |
| Solution preparation | Water is the sensible first choice given logP −4. No numerical solubility exists in any registry; determine it on your own material and record the temperature |
| Solid form | Described in law as a white crystalline powder [5] and corroborated by the historical crystallisation [15] and single-crystal structure [14]. No powder-diffraction data and no polymorph screen exist publicly; if your work depends on solid form, that determination is yours to make |
| Waste | Halogen-free organic chemical waste, in accordance with local regulations. Do not release to drains |
| Records | Archive any spectrum you record — particularly a 31P, 1H or infrared spectrum. None of the three exists publicly for this compound, so yours has value beyond your own laboratory |
Three separate factors stand between a reading on a balance and a mole count for this substance, and they compound.
| Assumption | Amount of substance | Relative to the nominal figure |
|---|---|---|
| Inner salt, anhydrous, 100% pure (nominal) | 1000 / 488.32 = 2.048 mmol | — |
| Sodium salt instead of inner salt | 1000 / 510.31 = 1.960 mmol | 4.3% lower |
| Inner salt at the legal limits: 5.0% loss on drying, assay 98% of dry matter [5] | 1000 × 0.95 × 0.98 = 931 mg → 1.907 mmol | 6.9% lower |
| Sodium salt and at the legal limits | 1.824 mmol | 10.9% lower |
The point of that table is not that any particular lot sits at the worst case. It is that a purity figure quoted without a basis is not a specification. “Ninety-nine per cent” means one thing as-is and another on dry matter, and for a compound whose legal specification is written explicitly on dry matter with a separate water tolerance beside it, the difference is not academic. Ask for the assay basis and the water content on the lot documentation, and calculate from those.
This is a milder version of a problem that recurs across polar and salt-forming reference materials. For alpha-GPC the same conversation is dominated by hygroscopicity, because that compound takes up water while it is being weighed. For citicoline the water is bounded by a legal limit rather than by a measured uptake rate — which is a better position to be in, but only if the number on the certificate tells you where inside that bound your lot sits.
| Claim | Status |
|---|---|
| Chemical identity: CAS, formula, molecular and monoisotopic mass, InChI, InChIKey, stereodescriptor counts | Quoted from two independent sources that agree — the compound registry [1] and the text of the European implementing regulation [5]. Not one source cited twice |
| Distinction between the inner salt and the sodium salt | Both records quoted in full with their own identifiers [1][2]; the mass difference is arithmetic on those two records |
| The near-duplicate records in section 3 | Each identified by its own registry entry [3][4] with its InChIKey quoted, so the reader can check the discrimination independently |
| Absence of NMR, infrared, Raman and ultraviolet data | A finding about the record, not an incomplete search — established by reading the whole spectral section [1] |
| Regulatory statements in section 11 | Measured against named documents [5][9][10][11][12], each negative accompanied by a positive control that fired on the same document |
| Specification figures in section 7 | Quoted from the Official Journal text [5]. Food law, not pharmacopoeial law — see the caveat at the end of that section |
| Fragment assignments in section 7 | Our interpretation of deposited masses [13], consistent with the composition, not a quotation from a published fragmentation study |
| Method suggestions in section 6 | Starting points, not validated procedures. No validated standalone method for this substance was found in the indexed literature |
| Melting point, boiling point, density, solubility, acid dissociation constant, specific rotation | Not certified — no experimental value exists in any registry we can reach. The one paper devoted to the compound's physicochemistry has no digital identifier and could not be read [16] |
| Hygroscopicity | Not certified. No study exists. What exists is a legal tolerance on loss on drying [5], which is a different kind of statement |
| Polymorphism, particle size, water content of the lot | Not certified in catalogue copy. No polymorph screen for this compound is public |
| Purity figure for the lot supplied | Not asserted in catalogue copy. Stated on lot documentation together with the method and, for this substance specifically, the basis — as-is or on dry matter — and the water content |
| Manufacturing route of the lot supplied | Not asserted here. European law authorises both a synthetic and a fermentation route with identical main specifications [5], and trace profiles differ between them; where the route matters to your work, ask for it in writing |
| Identifiers from outside the primary registry | A metabolite-database identifier for this compound circulates via a secondary source; it is not present in the compound record and we could not confirm it at origin, so we do not print it as a fact |
| Pharmacological or nutritional claims | None made. Section 10 describes published literature; that is a description of literature, not a property of this article. The 2024 European scientific opinion on a memory-related claim concluded that a cause-and-effect relationship has not been established [7], and no such claim appears anywhere on this page |
This material is supplied as a laboratory reagent and analytical reference material, for in-vitro laboratory use by qualified personnel in an appropriately equipped facility. It is not a medicinal product, not a dietary supplement, not a food, feed or cosmetic ingredient, not a novel food placed on the market as such, and it is not supplied for administration to humans or animals in any form or by any route.
By ordering, the purchaser confirms that they are a professional user acquiring the material for laboratory purposes; that they will handle it in accordance with section 13 and their own institutional risk assessment; that they will not administer it to humans or animals, nor supply it to any person who intends to; and that they are responsible for compliance with all laws applicable at the destination. That last point carries particular weight for this substance, because it is an authorised medicine in some jurisdictions, an authorised food ingredient under quantitative limits in the European Union, and an unregistered chemical in Poland — three regimes, one molecule.
Every unit is supplied with lot documentation. Section 14 sets out precisely which statements that documentation covers and which it does not. The general conditions applying to this and every other reference material in the range are collected in the reference standards category.
Nothing on this page is medical or nutritional advice, nor an offer of a medicinal product or a food. Statements in sections 10 and 11 describe published research and the regulatory position of the substance in various jurisdictions; they describe neither this article nor any use of it.
-UHFFFAOYSA-N instead of -OJAKKHQRSA-N [3]. It is the same connectivity drawn without stereochemistry, and it reports defined 0 / undefined 4. Formula and accurate mass cannot tell the two records apart; only the full InChIKey can.